Competition

An annual competition is organized to stimulate implementation of SBGN support and the use of the notation. The categories in which to compete are better suited either for developers or for end users. Everyone is allow to compete, and the entries are judged by the community.

• Categories
• Competition 2011
• Competition 2010

Categories

Best SBGN software support (1) - Completeness, exactitude, validation

Submit details of your software, including links to the instructions for installation and use. Provide visual proofs that a) your software supports all or most of SBGN languages, b) your software uses the languages accurately, following not only the glyphs but also the syntax and semantics, c) is able to catch or correct mistakes made by users.

Best SBGN software support (2) - Layout and rendering

Submit visual evidence that your software optimize the layout of complex pathways or network, and render SBGN maps in a user friendly manner, combining usability and aesthetics.

Best SBGN map: Breadth, accuracy, aesthetics

This category is geared toward end-user. Provide a high resolution image of your work in SBGN, regardless of the software used to draw it. It can be an SBGN supporting editor, or just a vectorial drawing program.

Best SBGN outreach: lecture, training, publication, book, website

Advocating SBGN will be crucial for its wide adoption. Please provide details of your outreach activity, whether links, multimedia files, printout etc.

Competition 2011

The submission for entries was opened at the HARMONY meeting in April 2011. You can consult the list of entries. Votes must be filled before Sept 23rd 2011.

Below are all the submissions to the SBGN annual competition 2010, grouped by sections. The winners are:

• Best SBGN software support: SBGN-ED
• Best Map: KEGG pathways in SBGN
• Outreach: Database: iPAVS

Best SBGN software support

Software must be evaluated according to multiple criteria such as completeness, exactitude, and validation of SBGN or layout and rendering of the maps.

iPAVS

iPAVS	-
Website: http://ipavs.cidms.org Contact: Pradeep Kumar pradeeps@gist.ac.kr ‎Document describing the submission

SBGN-ED - WINNER

SBGN-ED	WINNER
Website: http://www.sbgn-ed.org/ Contact: Falk Schreiber falk.schreiber@uni-konstanz.de File containing the submission

Best SBGN map: Breadth, accuracy, aesthetics

ER Stress response

ER Stress response	-
Contact: Pradeep Kumar pradeeps@gist.ac.kr ‎Document describing the submission full size map

KEGG pathways in SBGN - WINNER

KEGG pathways in SBGN	WINNER
Contact: Falk Schreiber falk.schreiber@uni-konstanz.de ‎Document describing the submission full size map

TGF beta signaling pathway

TGF beta signaling pathway	-
Contact: Katja Wegner k.wegner@herts.ac.uk ‎Document describing the submission full size map

Calcium regulation of synaptic plasticity

Calcium regulation of synaptic plasticity	-
Contact: Michele Mattioni mattioni@ebi.ac.uk ‎Document describing the submission full size map

Best SBGN outreach: lecture, training, publication, book, website

Database: iPAVS - WINNER

Database: iPAVS	WINNER
Website: http://ipavs.cidms.org Contact: Pradeep Kumar pradeeps@gist.ac.kr Document describing the submission

Database: MetaCrop SBGN Maps

Database: MetaCrop SBGN maps	-
Website: http://metacrop.ipk-gatersleben.de Contact: Falk Schreiber falk.schreiber@uni-konstanz.de ‎Document describing the submission

Competition 2010

The submission for entries was opened on April 22nd 2010 and closed on August 15th 2010. You can consult the list of entries. Entries were evaluated by the community between September 1st 2010 and the end of September 2010, each category being subjected to a vote. Results were disclosed at the 2010 annual forum.

Below are all the submissions to the SBGN annual competition 2010, grouped by sections. The winners are:

Completeness, exactitude, validation: SBGN-ED
Layout and rendering: Tie between Arcadia and VISIBIOweb
Best Map: Plant central metabolism
Outreach: Anatoly Sorokin

Best SBGN software support (1) - Completeness, exactitude, validation

BIOCHAM

BIOCHAM	-
Website: http://contraintes.inria.fr/BIOCHAM/ Contact: Dragana Jovanovska prijatelkatadadicka@yahoo.com ‎Document describing the submission

CellDesigner

CellDesigner	-
Website: http://www.celldesigner.org/ Contact: Yukiko Matsuoka myukiko@sbi.jp ‎Document describing the submission

SBGN-ED - WINNER

SBGN-ED	WINNER
Website: http://vanted.ipk-gatersleben.de/addons/sbgn-ed/ Contact: Falk Schreiber falk.schreiber@uni-konstanz.de ‎Document describing the submission complete submission

Best SBGN software support (2) - Layout and rendering

Arcadia - WINNER

Arcadia	WINNER
Website: http://arcadiapathways.sourceforge.net/ Contact: Alice Villeger alice.villeger@manchester.ac.uk ‎Complete submission

VISIBIOweb - WINNER

VISIBIOweb	WINNER
Website: http://www.bilkent.edu.tr/~bcbi/pvs.html Contact: Ugur Dogrusoz ugur@cs.bilkent.edu.tr ‎Complete submission 1

Best SBGN map: Breadth, accuracy, aesthetics

Plant central metabolism - WINNER

Plant central metabolism	WINNER
Contact: Falk Schreiber falk.schreiber@uni-konstanz.de ‎Document describing the submission full size map

Development of Diabetic Retinopathy

Development of Diabetic Retinopathy	-
Contact: Bernard de Bono bdb@ebi.ac.uk ‎Document describing the submission full size map

Effect of Uranium

Effect of Uranium	-
Contact: Anatoly Sorokin asorokin@inf.ed.ac.uk ‎Document describing the submission full size map

Best SBGN outreach: lecture, training, publication, book, website

Tutorial by Yukiko Matsuoka

• Contact: Yukiko Matsuoka myukiko@sbi.jp
• Outreach material (tutorial)
• Outreach material (supplementary)

Article by Falk Schreiber

• Contact: Falk Schreiber falk.schreiber@uni-konstanz.de
• Document describing the submission
• Outreach material (article)

Tutorial by Anatoly Sorokin - WINNER

• Contact: Anatoly Sorokin asorokin@inf.ed.ac.uk
• Outreach material (tutorial)

Tutorial by Richard Adams

• Contact: Richard Adams richard.adams@ed.ac.uk
• Outreach material (tutorial)
• Covering Letter for the submission