How to cite SBGN

SBGN standard

The Systems Biology Graphical Notation.
Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H. Nat Biotechnol. 2009 Aug;27(8):735-41.
doi: 10.1038/nbt.1558. PMID: 19668183.
BibTeX

SBGNML file format

Systems biology graphical notation markup language (SBGNML) version 0.3.
Bergmann FT, Czauderna T, Dogrusoz U, Rougny A, Dräger A, Touré V, Mazein A, Blinov ML, Luna A.
J Integr Bioinform. 2020 Jun 22;17(2-3):/j/jib.2020.17.issue-2-3/jib-2020-0016/jib-2020-0016.xml.
doi: 10.1515/jib-2020-0016. PMID: 32568733.
BibTeX

Software support for SBGN maps: SBGN-ML and LibSBGN.
van Iersel MP, Villéger AC, Czauderna T, Boyd SE, Bergmann FT, Luna A, Demir E, Sorokin A, Dogrusoz U, Matsuoka Y, Funahashi A, Aladjem MI, Mi H, Moodie SL, Kitano H, Le Novère N, Schreiber F.
Bioinformatics. 2012 Aug 1;28(15):2016-21.
doi: 10.1093/bioinformatics/bts270. PMID: 22581176.
BibTeX

Process Description language

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
Rougny A, Touré V, Moodie S, Balaur I, Czauderna T, Borlinghaus H, Dogrusoz U, Mazein A, Dräger A, Blinov ML, Villéger A, Haw R, Demir E, Mi H, Sorokin A, Schreiber F, Luna A.
J Integr Bioinform. 2019 Jun 13;16(2):20190022.
doi: 10.1515/jib-2019-0022. PMID: 31199769.
BibTeX

Activity Flow language

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.
Mi H, Schreiber F, Moodie S, Czauderna T, Demir E, Haw R, Luna A, Le Novère N, Sorokin A, Villéger A.
J Integr Bioinform. 2015 Sep 4;12(2):265.
doi: 10.2390/biecoll-jib-2015-265. PMID: 26528563.
BibTeX

Entity Relationships language

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
Sorokin A, Le Novère N, Luna A, Czauderna T, Demir E, Haw R, Mi H, Moodie S, Schreiber F, Villéger A.
J Integr Bioinform. 2015 Sep 4;12(2):264.
doi: 10.2390/biecoll-jib-2015-264. PMID: 26528562.
BibTeX