Systems Biology Graphical Notation

About

The mission of SBGN project is to develop high quality, standard graphical languages for representing biological processes and interactions. Each SBGN language is based on the consensus of the broad international SBGN community of biologists, curators and software developers. Over the course of its development many individuals, organizations and companies made invaluable contributions to the SBGN through participating in discussions and meetings, providing feedback on the documentation and worked examples, adopting the standard and spreading the word.

Get involved

Regardless of your experience or involvement level, we value your ideas and feedback. For reporting issues, suggesting enhancements or requesting features please use the dedicated trackers on our code repositories. For general discussions about SBGN: please join the sbgn-discuss mailing list and bring up the topic there. For specific questions about this website, workshops, or other SBGN resource management topics: please send a message to the sbgn-editors mailing list. SBGN meetings and workshops provide the best environment for learning about the process and getting involved. Please check the Events page for the upcoming events.

SBGN Editors

The SBGN Editors work towards distilling discussions and requests into coherent specification documents, addressing comments and questions, correcting errata, and generally managing revisions to the SBGN specifications. The editors do not decide what to put in the specifications—they are the voice and the hand of the community. The SBGN editors are elected by the community for 3-year terms as volunteers. There is no limit on the number of terms one can serve as an editor. An serving editor, however, cannot stand for election thereby forcing a gap year between two successive terms.

Current editors Name Election period
Luna Augustin Luna 2014 - 2017
Haw Robin Haw 2014 - 2017
Mazein Alexander Mazein 2015 - 2018
Czauderna Tobias Czauderna 2016 - 2019
Dogrusoz Ugur Dogrusoz 2016 - 2019


Former editors Name Election period
Le Novère Nicolas Le Novère Dec 2015 - Dec 2016
Sep 2008 - Dec 2012
Mi Huaiyu Mi Dec 2013 - Dec 2016
Jan 2009 - Dec 2011
Czauderna Tobias Czauderna Jan 2012 - Dec 2015
Moodie Stuart Moodie Sep 2012 - Dec 2015
Sep 2008 - Dec 2011
Schreiber Falk Schreiber Jan 2012 - Dec 2014
Sep 2008 - Dec 2010
Sorokin Anatoly Sorokin Jan 2012 - Dec 2014
Sep 2008 - Dec 2009
Villéger Alice Villéger Jan 2011 - Dec 2013
Demir Emek Demir Jan 2010 - Dec 2012

SBGN Scientific Committee

The duties of the SBGN Scientific committee are to help securing the financial support for SBGN development, to advocate the use of the language in their community, and to check that the development of SBGN is harmonious and democratic. The scientific committee does not have any decision-making power on the content of SBGN, although its advices presumably weight much in the decisions taken by the community.

Principal investigators of grants supporting SBGN development and maintenance are entitled to become members. Other memberships are proposed by the running Scientific Committee and the Editorial Board. Invited members may be pioneers or major players in the field of graphical representation of knowledge, or leading figures in fields that may endorse SBGN. New memberships require unanimity of expressed opinions from current members. The terms of invited members are yearly, renewable without restriction. Renewal must be proposed and seconded by existing members of scientific committee.

Current members Name More information
Goryyanin Igor Goryanin SBGN PI joined in 2009.
Kitano Hiroaki Kitano SBGN PI joined in 2009.
Schreiber Falk Schreiber SBGN PI joined in 2013.
Hucka Michael Hucka member invited in 2009. (Ph.D. in Computer Science and
Engineering) Senior Research Fellow at Caltech. He has
chaired the SBML effort by community consensus since
2003. Today he works on all aspects of SBML and is
involved with BioModels.net activities.
Bader Gary Bader member invited in 2010. (Ph.D. Biochemistry) Works
on biological network analysis and pathway information
resources as an Assistant Professor at The Donnelly
Centre at the University of Toronto. He has been
involved in leading development of protein interaction
and pathway databases and standards, including
the BioPAX biological pathways exchange language
Thomas Paul Thomas member invited in 2011.(Ph.D.) Associate Professor
of Preventive Medicine (Chief, Division of Bioinformatics)
and Biology, University of Southern California, Los
Angeles. Works on the evolution of gene function and
biological systems, and is a PI of the Gene Ontology project.

Kurt Kohn was an invited member between 2009 and 2010. Nicolas Le Novère was a PI and invited member between 2009 and 2015.

Funding

We are deeply indebted to the many funding agencies and organizations that have supported SBGN over the years.

The development of SBGN during 2005–2008 was mainly supported by a grant from the Japanese New Energy and Industrial Technology Development Organization (NEDO). The principal investigators were Hiroaki Kitano, Akira Funahashi, Nicolas Le Novère, and Michael Hucka. The Okinawa Institute of Science and Technology (OIST), the British Biotechnology and Biological Sciences Research Council (BBSRC) through a Japan Partnering Award, and a US Partnering Award, the European Media Laboratory (EML Research GmbH), the Beckman Institute BNMC at the California Institute of Technology, and US National Science Foundation (NSF) provided additional support for SBGN workshops.

Ownership

No one—not the principal investigators, nor the SBGN Editors, nor the members of the SBGN Scientific Committee, nor the funding agencies or anyone else—owns SBGN; it is a free and open community effort that extends beyond any single group, and we view ourselves only as organizers and fellow developers.